(txid28526[orgn] AND "cultivar LA0716"[All Fields]) AND gds_sra[filter - GEO DataSets - NCBI

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Select item 2000935561.

Regulatory divergence controlling wound-responsive gene expression in domesticated and wild tomatoes

(Submitter supplied) We report the global wound-induced gene expression profile to compare the underlying transcriptional mechansims among S. lycopersicum, jasmonic acid–insensitive1 (jai1) and S. pennellii.

Organism:: Solanum pennellii; Solanum lycopersicum

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL19694 GPL22916 GPL24633
48 Samples

Download data: XLSX

Series

Accession:: GSE93556

ID:: 200093556

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000972062.

Paramutation of natural epialleles in tomato [sRNA]

(Submitter supplied) By using DNA methylation of introgression lines as a marker of past paramutation, we characterise in details the paramutation of the \textit{H06} locus in crosses between Solanum lycopersicum and a range of tomato relatives and cultivars. Paramutation of H06 depends on the timing of sRNA production and conforms to the RNA-directed model of paramutation. By scanning the methylomes of tomato introgression lines for shared regions of differential methylation, thousands of candidate regions for paramutation are identified. more...

Organism:: Solanum lycopersicum; Solanum lycopersicum x Solanum pennellii; Solanum pennellii; Solanum pimpinellifolium

Type:: Non-coding RNA profiling by high throughput sequencing

6 related Platforms
31 Samples

Download data: TXT

Series

Accession:: GSE97206

ID:: 200097206

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 3024546443.

sp_systemic_w2_3

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454644

ID:: 302454644

SRA Run Selector

Select item 3024546434.

sp_systemic_w2_2

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454643

ID:: 302454643

SRA Run Selector

Select item 3024546425.

sp_systemic_w2_1

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454642

ID:: 302454642

SRA Run Selector

Select item 3024546416.

sp_systemic_w0.5_3

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454641

ID:: 302454641

SRA Run Selector

Select item 3024546407.

sp_systemic_w0.5_2

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454640

ID:: 302454640

SRA Run Selector

Select item 3024546398.

sp_systemic_w0.5_1

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454639

ID:: 302454639

SRA Run Selector

Select item 3024546389.

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454638

ID:: 302454638

SRA Run Selector

Select item 30245463710.

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454637

ID:: 302454637

SRA Run Selector

Select item 30245463611.

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454636

ID:: 302454636

SRA Run Selector

Select item 30245463512.

sp_local_w0.5_3

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454635

ID:: 302454635

SRA Run Selector

Select item 30245463413.

sp_local_w0.5_2

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454634

ID:: 302454634

SRA Run Selector

Select item 30245463314.

sp_local_w0.5_1

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454633

ID:: 302454633

SRA Run Selector

Select item 30245463215.

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454632

ID:: 302454632

SRA Run Selector

Select item 30245463116.

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454631

ID:: 302454631

SRA Run Selector

Select item 30245463017.

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL22916
Series:: GSE93556

Sample

Accession:: GSM2454630

ID:: 302454630

SRA Run Selector

Select item 30302019618.

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL24633
Series:: GSE93556

Sample

Accession:: GSM3020196

ID:: 303020196

SRA Run Selector

Select item 30302019519.

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL24633
Series:: GSE93556

Sample

Accession:: GSM3020195

ID:: 303020195

SRA Run Selector

Select item 30302019420.

Organism:: Solanum pennellii

Source name:: leaves

Platform:: GPL24633
Series:: GSE93556

Sample

Accession:: GSM3020194

ID:: 303020194

SRA Run Selector

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